SNP Profiles matching POUND 4 /A

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_Input profile	CC	AG	GG	CT	TT	AC	CC	CC	CC	AA	AG	CC	AG	CC
1._PA_70_[PER]	CC	AG	GG	CT	TT	AC	CC	CC	CC	AA	AG	CC	AG	CC
2._GC-04-053-3-17	CC	AG	GG	CT	TT	AC	CC	CC	CC	AA	AG	CC	AG	CC
3._POUND_4_/A	CC	AG	GG	CT	TT	AC	CC	CC	CC	AA	AG	CC	AG	CC
4._POUND_4_/A	CC	AG	GG	CT	TT	AC	CC	CC	CC	AA	AG	CC	AG	CC
5._POUND_4_/A	CC	AG	GG	CT	TT	AC	CC	CC	CC	AA	AG	CC	AG	CC
6._GC-08-159-4-02	CC	AG	GG	CT	TT	AC	CC	CC	CC	AA	AG	CC	AG	CC
7._GC-08-159-4-02	CC	AG	GG	CT	TT	AC	CC	CC	CC	AA	AG	CC	AG	CC
8._GC-08-159-4-02	CC	AG	GG	CT	TT	AC	CC	CC	CC	AA	AG	CC	AG	CC
9._GC-08-159-4-02	CC	AG	GG	CT	TT	AC	CC	CC	CC	AA	AG	CC	AG	CC
10._POUND_4_/A	CC	AG	GG	CT	TT	AC	CC	CC	CC	AA	AG	CC	AG	CC
11._GC-08-158-4-01	CC	AG	GG	CT	TT	AC	CC	CC	CC	AA	AG	CC	AG	CC
12._RUQ_33	_	AG	GG	CT	_	_	_	_	_	_	_	CC	AG	_
13._RUQ_33	CC	AG	GG	CT	TT	AC	CC	CC	CC	AA	AG	CC	AG	CC
14._PA_70_[PER]	CC	AG	GG	CT	TT	AC	CC	CC	_	AA	AG	CC	AG	CC
15._PA_46_[PER]	CC	GG	GG	CT	TT	AC	CC	CC	CC	AA	GG	CC	AG	CT

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	CG	CT	CC	GG	GG	AG	TT	AC	GG	TT	AA	AA	GG
1._PA_70_[PER]	AA	CG	CT	CC	GG	GG	AG	TT	AC	GG	TT	AA	AA	GG
2._GC-04-053-3-17	AA	CG	CT	CC	GG	GG	AG	TT	AC	GG	TT	AA	AA	GG
3._POUND_4_/A	AA	CG	CT	CC	GG	GG	AG	TT	AC	GG	TT	AA	AA	GG
4._POUND_4_/A	AA	CG	CT	CC	GG	GG	AG	TT	AC	GG	TT	AA	AA	GG
5._POUND_4_/A	AA	CG	CT	CC	GG	GG	AG	TT	AC	GG	TT	AA	AA	GG
6._GC-08-159-4-02	AA	CG	CT	CC	GG	GG	AG	TT	AC	GG	TT	AA	AA	GG
7._GC-08-159-4-02	AA	CG	CT	CC	GG	GG	AG	TT	AC	GG	TT	AA	AA	GG
8._GC-08-159-4-02	AA	CG	CT	CC	GG	GG	AG	TT	AC	GG	TT	AA	AA	GG
9._GC-08-159-4-02	AA	CG	CT	CC	GG	GG	AG	TT	AC	GG	TT	AA	AA	GG
10._POUND_4_/A	AA	CG	CT	CC	GG	GG	AG	TT	_	GG	TT	AA	AA	GG
11._GC-08-158-4-01	AA	CG	CT	CC	GG	GG	AG	TT	_	GG	TT	AA	AA	GG
12._RUQ_33	_	_	_	CC	GG	GG	_	TT	AC	GG	TT	AA	AA	_
13._RUQ_33	AA	CG	CT	CC	GG	GG	AA	TT	AC	GG	TT	AA	AA	GG
14._PA_70_[PER]	AA	CG	CT	CC	GG	GG	AA	TT	AC	GG	TT	AA	AA	GG
15._PA_46_[PER]	AA	CG	CT	CC	GG	-	AA	TT	AC	GG	CT	AA	AA	GG

	29	30	31	32	33	34	35	36	37	38
_Input profile	AA	CC	AG	CC	AA	CC	GG	AA	AT	GG	X_X	X_X	X_X	X_X
1._PA_70_[PER]	AA	CC	AG	CC	AA	CC	GG	AA	AT	GG	X_X	X_X	X_X	X_X
2._GC-04-053-3-17	AA	CC	AG	CC	AA	CC	GG	AA	AT	GG	X_X	X_X	X_X	X_X
3._POUND_4_/A	AA	CC	AG	CC	AA	CC	GG	AA	AT	GG	X_X	X_X	X_X	X_X
4._POUND_4_/A	AA	CC	AG	CC	AA	CC	GG	AA	AT	GG	X_X	X_X	X_X	X_X
5._POUND_4_/A	AA	CC	AG	CC	AA	CC	GG	AA	AT	GG	X_X	X_X	X_X	X_X
6._GC-08-159-4-02	AA	CC	AG	CC	AA	CC	GG	AA	AT	GG	X_X	X_X	X_X	X_X
7._GC-08-159-4-02	AA	CC	AG	CC	AA	CC	GG	AA	AT	GG	X_X	X_X	X_X	X_X
8._GC-08-159-4-02	AA	CC	AG	CC	AA	CC	GG	AA	AT	GG	X_X	X_X	X_X	X_X
9._GC-08-159-4-02	AA	CC	AG	CC	AA	CC	GG	AA	AT	GG	X_X	X_X	X_X	X_X
10._POUND_4_/A	AA	CC	AG	CC	AA	CC	GG	AA	AT	GG	X_X	X_X	X_X	X_X
11._GC-08-158-4-01	AA	CC	AG	CC	AA	CC	GG	AA	AT	GG	X_X	X_X	X_X	X_X
12._RUQ_33	AA	CC	AG	CC	AA	CC	GG	AA	_	_	X_X	X_X	X_X	X_X
13._RUQ_33	AA	CC	AG	CC	AA	CC	GG	AA	AT	GG	X_X	X_X	X_X	X_X
14._PA_70_[PER]	AA	CC	AG	_	AA	CC	GG	AA	AT	GG	X_X	X_X	X_X	X_X
15._PA_46_[PER]	AA	CC	GG	-	AA	CC	GG	AC	AT	GG	X_X	X_X	X_X	X_X

Input profile: POUND_4_/A

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Mars Center for Cocoa Science, Brazil

Location: 8402 5

Dapeng Zhang, 2016

1._PA_70_[PER]

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4317 6 > FP

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

2._PA_70_[PER] GC-04-053-3-17

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6 > FP2 (verde)

3._POUND_4_/A

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8402 8

Dapeng Zhang, 2016

4._POUND_4_/A

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8402 10

Dapeng Zhang, 2016

5._POUND_4_/A

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8402 13

Dapeng Zhang, 2016

6._POUND_4_/A GC-08-159-4-02

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

7._POUND_4_/A GC-08-159-4-02

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

8._POUND_4_/A GC-08-159-4-02

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

9._POUND_4_/A GC-08-159-4-02

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13

10._POUND_4_/A

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8401 8

Dapeng Zhang, 2016

11._POUND_4_/A GC-08-158-4-01

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

12._PA_70_[PER] RUQ_33

identical
22 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

13._PA_70_[PER] RUQ_33

98.7 %
38 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

14._PA_70_[PER]

98.6 %
36 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D634

Dapeng Zhang, 2016

15._PA_46_[PER]

90.3 %
36 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D 235

Dapeng Zhang, 2014

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1165	9	TcSNP1144	10	TcSNP1075
11	TcSNP1062	12	TcSNP1060	13	TcSNP998	14	TcSNP994	15	TcSNP953
16	TcSNP929	17	TcSNP917	18	TcSNP891	19	TcSNP872	20	TcSNP723
21	TcSNP645	22	TcSNP619	23	TcSNP591	24	TcSNP560	25	TcSNP534
26	TcSNP529	27	TcSNP469	28	TcSNP429	29	TcSNP372	30	TcSNP242
31	TcSNP230	32	TcSNP226	33	TcSNP193	34	TcSNP151	35	TcSNP150
36	TcSNP144	37	TcSNP32	38	TcSNP25